From be3a4ec301ed1a48010bc15b1f41b2d6b875ba8f Mon Sep 17 00:00:00 2001 From: Stefano Pigozzi Date: Mon, 28 Nov 2022 14:30:41 +0100 Subject: [PATCH] Update README --- README.md | 185 ++---------------------------------------------------- 1 file changed, 6 insertions(+), 179 deletions(-) diff --git a/README.md b/README.md index 2b05911..eb14a2a 100644 --- a/README.md +++ b/README.md @@ -1,8 +1,8 @@ \[ **Stefano Pigozzi** + **Caterina Gazzotti** + **Fabio Zanichelli** | Topic OpenMP | High Performance Computing Laboratory | Unimore \] -# C code optimization using OpenMP +# C code optimization using NVIDIA CUDA -> ### Assignment #1 +> ### Assignment #2 > > Every team is called to optimize (parallellize) the execution time of the assigned applications on multi-processor system. > @@ -22,17 +22,6 @@ * [Enabled extra warnings by default](https://github.com/Steffo99/unimore-hpc-1/blob/bffa0502393d97e7cda4ac34c57dd9c3ac9ac9dc/OpenMP/linear-algebra/kernels/atax/Makefile#L6-L8) * [Applied the maximum level of compiler optimizations](https://github.com/Steffo99/unimore-hpc-1/blob/bffa0502393d97e7cda4ac34c57dd9c3ac9ac9dc/OpenMP/linear-algebra/kernels/atax/Makefile#L9-L10) * [Replaced `tmp` array with a iteration-local variable](https://github.com/Steffo99/unimore-hpc-1/commit/7fc2506cc7c6743288a56047cbb44e960abec4fc) -* Created static OpenMP parallelizations to most `for` loops in the program: - * [First loop of `init_array`](https://github.com/Steffo99/unimore-hpc-1/blob/bffa0502393d97e7cda4ac34c57dd9c3ac9ac9dc/OpenMP/linear-algebra/kernels/atax/atax.c#L29) - * [Second loop of `init_array`](https://github.com/Steffo99/unimore-hpc-1/blob/bffa0502393d97e7cda4ac34c57dd9c3ac9ac9dc/OpenMP/linear-algebra/kernels/atax/atax.c#L37) - * [First loop of `kernel_atax`](https://github.com/Steffo99/unimore-hpc-1/blob/bffa0502393d97e7cda4ac34c57dd9c3ac9ac9dc/OpenMP/linear-algebra/kernels/atax/atax.c#L71) - * [Second loop of `kernel_atax`](https://github.com/Steffo99/unimore-hpc-1/blob/bffa0502393d97e7cda4ac34c57dd9c3ac9ac9dc/OpenMP/linear-algebra/kernels/atax/atax.c#L80) -* Gated parallelizations behind flags, allowing their configurations at compile time: - * [`TOGGLE_INIT_ARRAY_1` for the first loop of `init_array`](https://github.com/Steffo99/unimore-hpc-1/blob/bffa0502393d97e7cda4ac34c57dd9c3ac9ac9dc/OpenMP/linear-algebra/kernels/atax/atax.c#L28) - * [`TOGGLE_INIT_ARRAY_2` for the second loop of `init_array`](https://github.com/Steffo99/unimore-hpc-1/blob/bffa0502393d97e7cda4ac34c57dd9c3ac9ac9dc/OpenMP/linear-algebra/kernels/atax/atax.c#L36) - * [`TOGGLE_KERNEL_ATAX_1` for the first loop of `kernel_atax`](https://github.com/Steffo99/unimore-hpc-1/blob/bffa0502393d97e7cda4ac34c57dd9c3ac9ac9dc/OpenMP/linear-algebra/kernels/atax/atax.c#L70) - * [`TOGGLE_KERNEL_ATAX_2` for the second loop of `kernel_atax`](https://github.com/Steffo99/unimore-hpc-1/blob/bffa0502393d97e7cda4ac34c57dd9c3ac9ac9dc/OpenMP/linear-algebra/kernels/atax/atax.c#L79) -* [Made the parallelization thread count configurable at compile time](https://github.com/Steffo99/unimore-hpc-1/blob/bffa0502393d97e7cda4ac34c57dd9c3ac9ac9dc/OpenMP/linear-algebra/kernels/atax/Makefile#L11-L12) * [Allowed the addition of `CFLAGS` from `make` calls](https://github.com/Steffo99/unimore-hpc-1/blob/bffa0502393d97e7cda4ac34c57dd9c3ac9ac9dc/OpenMP/linear-algebra/kernels/atax/Makefile#L13-L14) * [Disabled `make` output](https://github.com/Steffo99/unimore-hpc-1/commit/f655df0eb7e539b06965de7c79dbc1c7bc6a5950) * [Created `make bench` target to run](https://github.com/Steffo99/unimore-hpc-1/blob/bffa0502393d97e7cda4ac34c57dd9c3ac9ac9dc/OpenMP/linear-algebra/kernels/atax/Makefile#L20-L23) [a script performing multiple parametrized tests on the code to determine the best optimizations](https://github.com/Steffo99/unimore-hpc-1/blob/master/OpenMP/linear-algebra/kernels/atax/.bench.sh) @@ -40,173 +29,11 @@ ## Results -```console -$ make bench -Flags: -DMINI_DATASET -......................... Average of 25 runs: 1.35e-05 seconds -Flags: -DMINI_DATASET -DTOGGLE_INIT_ARRAY_1 -......................... Average of 25 runs: 1.92e-05 seconds -Flags: -DMINI_DATASET -DTOGGLE_INIT_ARRAY_2 -......................... Average of 25 runs: 2.16e-05 seconds -Flags: -DMINI_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_INIT_ARRAY_2 -......................... Average of 25 runs: 2.61e-05 seconds -Flags: -DMINI_DATASET -DTOGGLE_KERNEL_ATAX_1 -......................... Average of 25 runs: 1.9e-05 seconds -Flags: -DMINI_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_KERNEL_ATAX_1 -......................... Average of 25 runs: 2.12e-05 seconds -Flags: -DMINI_DATASET -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_1 -......................... Average of 25 runs: 2.36e-05 seconds -Flags: -DMINI_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_1 -......................... Average of 25 runs: 2.58e-05 seconds -Flags: -DMINI_DATASET -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 1.72e-05 seconds -Flags: -DMINI_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 1.91e-05 seconds -Flags: -DMINI_DATASET -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 2.12e-05 seconds -Flags: -DMINI_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 2.32e-05 seconds -Flags: -DMINI_DATASET -DTOGGLE_KERNEL_ATAX_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 1.92e-05 seconds -Flags: -DMINI_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_KERNEL_ATAX_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 2.11e-05 seconds -Flags: -DMINI_DATASET -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 2.3e-05 seconds -Flags: -DMINI_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 2.6e-05 seconds -Flags: -DSMALL_DATASET -......................... Average of 25 runs: 0.00751 seconds -Flags: -DSMALL_DATASET -DTOGGLE_INIT_ARRAY_1 -......................... Average of 25 runs: 0.00752 seconds -Flags: -DSMALL_DATASET -DTOGGLE_INIT_ARRAY_2 -......................... Average of 25 runs: 0.00279 seconds -Flags: -DSMALL_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_INIT_ARRAY_2 -......................... Average of 25 runs: 0.0028 seconds -Flags: -DSMALL_DATASET -DTOGGLE_KERNEL_ATAX_1 -......................... Average of 25 runs: 0.00761 seconds -Flags: -DSMALL_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_KERNEL_ATAX_1 -......................... Average of 25 runs: 0.00761 seconds -Flags: -DSMALL_DATASET -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_1 -......................... Average of 25 runs: 0.00289 seconds -Flags: -DSMALL_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_1 -......................... Average of 25 runs: 0.00293 seconds -Flags: -DSMALL_DATASET -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 0.00707 seconds -Flags: -DSMALL_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 0.00703 seconds -Flags: -DSMALL_DATASET -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 0.00228 seconds -Flags: -DSMALL_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 0.00227 seconds -Flags: -DSMALL_DATASET -DTOGGLE_KERNEL_ATAX_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 0.00707 seconds -Flags: -DSMALL_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_KERNEL_ATAX_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 0.00706 seconds -Flags: -DSMALL_DATASET -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 0.00228 seconds -Flags: -DSMALL_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 0.00228 seconds -Flags: -DSTANDARD_DATASET -......................... Average of 25 runs: 0.419 seconds -Flags: -DSTANDARD_DATASET -DTOGGLE_INIT_ARRAY_1 -......................... Average of 25 runs: 0.419 seconds -Flags: -DSTANDARD_DATASET -DTOGGLE_INIT_ARRAY_2 -......................... Average of 25 runs: 0.162 seconds -Flags: -DSTANDARD_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_INIT_ARRAY_2 -......................... Average of 25 runs: 0.162 seconds -Flags: -DSTANDARD_DATASET -DTOGGLE_KERNEL_ATAX_1 -......................... Average of 25 runs: 0.42 seconds -Flags: -DSTANDARD_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_KERNEL_ATAX_1 -......................... Average of 25 runs: 0.42 seconds -Flags: -DSTANDARD_DATASET -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_1 -......................... Average of 25 runs: 0.162 seconds -Flags: -DSTANDARD_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_1 -......................... Average of 25 runs: 0.162 seconds -Flags: -DSTANDARD_DATASET -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 0.386 seconds -Flags: -DSTANDARD_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 0.386 seconds -Flags: -DSTANDARD_DATASET -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 0.128 seconds -Flags: -DSTANDARD_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 0.128 seconds -Flags: -DSTANDARD_DATASET -DTOGGLE_KERNEL_ATAX_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 0.386 seconds -Flags: -DSTANDARD_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_KERNEL_ATAX_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 0.386 seconds -Flags: -DSTANDARD_DATASET -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 0.128 seconds -Flags: -DSTANDARD_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 0.129 seconds -Flags: -DLARGE_DATASET -......................... Average of 25 runs: 1.83 seconds -Flags: -DLARGE_DATASET -DTOGGLE_INIT_ARRAY_1 -......................... Average of 25 runs: 1.83 seconds -Flags: -DLARGE_DATASET -DTOGGLE_INIT_ARRAY_2 -......................... Average of 25 runs: 0.707 seconds -Flags: -DLARGE_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_INIT_ARRAY_2 -......................... Average of 25 runs: 0.707 seconds -Flags: -DLARGE_DATASET -DTOGGLE_KERNEL_ATAX_1 -......................... Average of 25 runs: 1.82 seconds -Flags: -DLARGE_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_KERNEL_ATAX_1 -......................... Average of 25 runs: 1.82 seconds -Flags: -DLARGE_DATASET -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_1 -......................... Average of 25 runs: 0.704 seconds -Flags: -DLARGE_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_1 -......................... Average of 25 runs: 0.703 seconds -Flags: -DLARGE_DATASET -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 1.64 seconds -Flags: -DLARGE_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 1.64 seconds -Flags: -DLARGE_DATASET -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 0.527 seconds -Flags: -DLARGE_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 0.527 seconds -Flags: -DLARGE_DATASET -DTOGGLE_KERNEL_ATAX_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 1.63 seconds -Flags: -DLARGE_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_KERNEL_ATAX_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 1.64 seconds -Flags: -DLARGE_DATASET -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 0.527 seconds -Flags: -DLARGE_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 0.525 seconds -Flags: -DEXTRALARGE_DATASET -......................... Average of 25 runs: 4.24 seconds -Flags: -DEXTRALARGE_DATASET -DTOGGLE_INIT_ARRAY_1 -......................... Average of 25 runs: 4.23 seconds -Flags: -DEXTRALARGE_DATASET -DTOGGLE_INIT_ARRAY_2 -......................... Average of 25 runs: 1.65 seconds -Flags: -DEXTRALARGE_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_INIT_ARRAY_2 -......................... Average of 25 runs: 1.65 seconds -Flags: -DEXTRALARGE_DATASET -DTOGGLE_KERNEL_ATAX_1 -......................... Average of 25 runs: 4.22 seconds -Flags: -DEXTRALARGE_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_KERNEL_ATAX_1 -......................... Average of 25 runs: 4.16 seconds -Flags: -DEXTRALARGE_DATASET -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_1 -......................... Average of 25 runs: 1.62 seconds -Flags: -DEXTRALARGE_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_1 -......................... Average of 25 runs: 1.62 seconds -Flags: -DEXTRALARGE_DATASET -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 3.69 seconds -Flags: -DEXTRALARGE_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 3.68 seconds -Flags: -DEXTRALARGE_DATASET -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 1.2 seconds -Flags: -DEXTRALARGE_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 1.2 seconds -Flags: -DEXTRALARGE_DATASET -DTOGGLE_KERNEL_ATAX_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 3.67 seconds -Flags: -DEXTRALARGE_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_KERNEL_ATAX_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 3.67 seconds -Flags: -DEXTRALARGE_DATASET -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 1.19 seconds -Flags: -DEXTRALARGE_DATASET -DTOGGLE_INIT_ARRAY_1 -DTOGGLE_INIT_ARRAY_2 -DTOGGLE_KERNEL_ATAX_1 -DTOGGLE_KERNEL_ATAX_2 -......................... Average of 25 runs: 1.19 seconds -``` +TBD ### Validation -* Compiler used: **gcc** +* Compiler used: **nvcc** * Jetson Nano used: `8` To reproduce the obtained results: @@ -214,7 +41,7 @@ To reproduce the obtained results: 1. Clone the repository on a Jetson Nano: ```console - $ git clone https://github.com/Steffo99/unimore-hpc-1 + $ git clone https://github.com/Steffo99/unimore-hpc-assignments ``` 2. Access our group's assigned folder: @@ -226,7 +53,7 @@ To reproduce the obtained results: 3. Checkout the exact commit the tests were executed on: ```console - $ git checkout 28479dfb4b730fb50a50e6da02b9b1fe4fb298db + $ git checkout TBD ``` 4. Run the benchmarking script: